Create a cooler from genomic pairs and bins
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
contacts:file
Path to contacts (e.g. read pairs, pairix, tabix) file.
index:file
Path to index file of the contacts.
meta2:map
chromsizes:file
Path to a chromsizes file.
mode:integer
Input mode for cooler cload - one of pairs, pairix, tabix
cool_bin:integer
Bins size in bp
cool
*.cool:file
Output COOL file path
*.cool
versions
versions.yml:file
File containing software versions
versions.yml
Sparse binary format for genomic interaction matrices
