What’s Changed

• Fix conda version tag to use pixelator 0.18.2 by @fbdtemme in https://github.com/nf-core/pixelator/pull/107
• Patch release 1.3.1 by @fbdtemme in https://github.com/nf-core/pixelator/pull/108

Full Changelog: https://github.com/nf-core/pixelator/compare/1.3.0…1.3.1

What’s Changed

• chore: sync dev after release and bump to 1.3.0dev by @fbdtemme in https://github.com/nf-core/pixelator/pull/95
• Make task.ext assigments closures by @fbdtemme in https://github.com/nf-core/pixelator/pull/96
• Update metromap to include layout step by @fbdtemme in https://github.com/nf-core/pixelator/pull/98
• Update citations by @fbdtemme in https://github.com/nf-core/pixelator/pull/97
• Chore/update readme by @ambarrio in https://github.com/nf-core/pixelator/pull/99
• Use R1/R2 suffixes in amplicon input fastq file renaming by @fbdtemme in https://github.com/nf-core/pixelator/pull/100
• Fix validation issue when using panel_file instead of panel by @fbdtemme in https://github.com/nf-core/pixelator/pull/101
• Restructure output folder by @fbdtemme in https://github.com/nf-core/pixelator/pull/102
• Make rate diff default colocalization transformation by @johandahlberg in https://github.com/nf-core/pixelator/pull/103
• Update pixelator to 0.18.1 by @fbdtemme in https://github.com/nf-core/pixelator/pull/104
• Bump version to 1.3.0 by @fbdtemme in https://github.com/nf-core/pixelator/pull/105
• Release pixelator 1.3.0 by @fbdtemme in https://github.com/nf-core/pixelator/pull/106

New Contributors

• @ambarrio made their first contribution in https://github.com/nf-core/pixelator/pull/99

Software versions

Software dependencies

[!NOTE] Dependency has been updated if both old and new version information is present. Dependency has been added if just the new version information is present. Dependency has been removed if new version information isn’t present.

Full Changelog: https://github.com/nf-core/pixelator/compare/1.2.0…1.3.0

What’s Changed

• Template update for nf-core/tools v2.14.1 by @fbdtemme in https://github.com/nf-core/pixelator/pull/89
• Update pixelator to 0.17.1 by @johandahlberg in https://github.com/nf-core/pixelator/pull/90
• Set process_high to use 64GB of RAM and process_high_memory to use 128GB of RAM by @johandahlberg in https://github.com/nf-core/pixelator/pull/91
• Minor documentation fixes by @johandahlberg in https://github.com/nf-core/pixelator/pull/92
• Improve read renaming by @fbdtemme in https://github.com/nf-core/pixelator/pull/93
• Release nf-core/pixelator 1.2.0 by @fbdtemme in https://github.com/nf-core/pixelator/pull/94

Full Changelog: https://github.com/nf-core/pixelator/compare/1.1.0…1.2.0

What’s Changed

• Important! Template update for nf-core/tools v2.13.1 by @nf-core-bot in https://github.com/nf-core/pixelator/pull/83
• Update to pixelator 0.16.2 by @johandahlberg in https://github.com/nf-core/pixelator/pull/84
• Remove a workaround for container issues, silence some warnings, update default resources by @fbdtemme in https://github.com/nf-core/pixelator/pull/85
• Release pixelator 1.1.0 by @fbdtemme in https://github.com/nf-core/pixelator/pull/86, https://github.com/nf-core/pixelator/pull/87

Software dependencies

NB: Dependency has been updated if both old and new version information is present.

NB: Dependency has been added if just the new version information is present.

NB: Dependency has been removed if new version information isn’t present.

Full Changelog: https://github.com/nf-core/pixelator/compare/1.0.3…1.1.0

What’s Changed

• Important! Template update for nf-core/tools v2.11 by @nf-core-bot in https://github.com/nf-core/pixelator/pull/74
• fix: use adapterqc output as main output of PIXELATOR_QC by @fbdtemme in https://github.com/nf-core/pixelator/pull/76
• fix validation issues with meta-schema by @fbdtemme in https://github.com/nf-core/pixelator/pull/77
• Prepare release 1.0.3 by @fbdtemme in https://github.com/nf-core/pixelator/pull/78
• Release 1.0.3 by @fbdtemme in https://github.com/nf-core/pixelator/pull/79

New Contributors

• @nf-core-bot made their first contribution in https://github.com/nf-core/pixelator/pull/74

Full Changelog: https://github.com/nf-core/pixelator/compare/1.0.2…1.0.3

[1.0.2] - 2023-11-20

Enhancements & fixes

• [PR #70] - Fix loading of absolute paths and urls in input samplesheet

[1.0.1] - 2023-10-27

Enhancements & fixes

• [PR #66] - Add a warning and workaround for singularity & apptainer
• Cleanup some linting warnings
• Update docker image in RENAME_READS to match the singularity container

Software dependencies

NB: Dependency has been updated if both old and new version information is present.

NB: Dependency has been added if just the new version information is present.

NB: Dependency has been removed if new version information isn’t present.

[1.0.0] - 2023-10-17

Initial release of nf-core/pixelator.